- Color code jmol helix seet code#
- Color code jmol helix seet download#
You can donwload analysed data for your own usage.
Color code jmol helix seet download#
Reference: King SM, Johnson WC Proteins 35, 313–320 (1999) (3.2) Download data
P and p - Beta-turns, and polyproline II type (3-1) helix. Reference: Cubellis MV, Cailliez F, Lovell SC BMC Bioinformatics 6, Suppl 4S8 (2005) (3.1.4) XTLSSTR: O - Coil (coded as "-" in this webserver). P - Polyproline II helix (in Mansiaux et al.). "-" - coil (residues which are not in any of the above conformations) JmolVersion6.07.11 sychronized with Jmol 14.6 bug fix: Jmol SMILES not allowing for insertion-code search - adds for insertion code. S - bend (it is a non-hydrogen-bond based assignment). (For the default colors and color values used in Jmol, see tables below. RC3 code: more efficient VRML export new feature: set helixStep 1,2,3. It can also be a JavaScript color name, a RasMol color name, or a Jmol color name. version11.9.5 bug fix: load xxx.jmol bug fix: better file previewer. B - residue in isolated β-bridge (single pair β-sheet hydrogen bond formation) Objects can be custom colored in Jmol using the color (or colour) command: color object color or color scheme color is specified as decimal red,green,blue or hexadecimal xRRGGBB triplets. E - extended strand in parallel and/or anti-parallel β-sheet conformation. Html element samples are also shown below the color detail page. Color code jmol helix seet code#
also generates a simple css code for the selected color. CPK: Colors objects based on the default color scheme, either Jmol or Rasmol, as set by the set defaultColors command and possibly modified using the color element command.
T - hydrogen bonded turn (3, 4 or 5 turn) Color-hex gives information about colors including color models (RGB,HSL,HSV and CMYK), Triadic colors, monochromatic colors and analogous colors calculated in color page. This color scheme is particularly useful for distinguishing the parts of a multimeric structure or the individual helices of a DNA double helix. Letter codes correspond to: (3.1.1)DSSP PPII: Letters are colored accordingly to more generals class of secondary structure (e.g., helix residue in red, strand in green, polyproline II helix in blue and non regular secondary structure in grey). One code letters is used to represent specific conformation. Direct use of conformation code Letters (detailled in section (3.1.1) ) You can search a fragment of specified conformation contained in a given structure using a simple regular expression pattern. 2.2.1) Choice of methods for number of residues in PPII conformation and pattern search 2.2.2) Minimal number of residues in PPII conformation in protein 2.2.3) Pattern of secondary structure PISCES: a protein sequence culling server. The advanced search database contains 24,761 protein chains extracted from a list of non reduntant set culled PDB by PISCES* (only X-Ray structures, maximum of 90% sequence identity between each protein chains, resolution less than 3.0 Å). You can perform a query to retrieve structures in the database by resolution (Å), protein length, minimal number of residues in PPII conformation, pattern of secondary structure. 
In advanced search mode you are able to perform more complex query.
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